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Product of 13mer primer with activated G monomer diastereomer 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6C8O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293.15 1.5 M Lithium sulfate, 50 mM TRIS pH 8.5, 5% w/v Glycerol
Crystal Properties Matthews coefficient Solvent content 2.35 47.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.723 α = 90 b = 42.723 β = 90 c = 85.822 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 CCD ADSC QUANTUM 315r 2021-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 50 99.2 0.077 0.082 0.027 1 24.2 9.5 5344
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.14 2.18 0.402 0.438 0.166 0.948 2.2 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6C8O 2.14 42.948 4650 239 86.399 0.218 0.2139 0.2188 0.2916 0.2882 22.402
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.015 0.03 -0.098
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 11.16 r_lrange_it 11.144 r_scangle_other 4.788 r_scangle_it 4.778 r_angle_other_deg 3.537 r_scbond_it 2.764 r_scbond_other 2.762 r_angle_refined_deg 2.603 r_chiral_restr_other 1.454 r_symmetry_nbtor_other 0.277
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 11.16 r_lrange_it 11.144 r_scangle_other 4.788 r_scangle_it 4.778 r_angle_other_deg 3.537 r_scbond_it 2.764 r_scbond_other 2.762 r_angle_refined_deg 2.603 r_chiral_restr_other 1.454 r_symmetry_nbtor_other 0.277 r_nbtor_refined 0.247 r_symmetry_xyhbond_nbd_refined 0.243 r_symmetry_nbd_other 0.237 r_nbd_other 0.217 r_xyhbond_nbd_refined 0.19 r_symmetry_nbd_refined 0.17 r_chiral_restr 0.168 r_nbd_refined 0.11 r_bond_other_d 0.029 r_symmetry_xyhbond_nbd_other 0.019 r_bond_refined_d 0.018 r_gen_planes_refined 0.012 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 378 Solvent Atoms 49 Heterogen Atoms 334
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing