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Borrelia burgdorferi HtpG N-terminal domain (1-228) in complex with BX-2819
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HHU PDB entry 3HHU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298.15 0.2 M magnesium chloride, 0.1 M Bis-Tris HCl, pH 5.5, 22.5% PEG3350
Crystal Properties Matthews coefficient Solvent content 1.94 36.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.385 α = 90 b = 52.428 β = 90 c = 159.039 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 48.03 99.7 0.0497 0.07028 0.0497 0.996 7.8 2 19889 35.26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.34 99.85 0.2739 0.3874 0.2739 0.697 2.46 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB entry 3HHU 2.28 48.03 1.34 19888 1998 99.68 0.2086 0.2059 0.2058 0.2322 0.2321 39.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 10.4622 f_angle_d 0.401 f_chiral_restr 0.0406 f_plane_restr 0.0018 f_bond_d 0.0015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3083 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 60
Software Software Software Name Purpose PHENIX refinement PHENIX phasing Aimless data scaling AutoProcess data processing Coot model building