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EBNA1 DNA binding domain (401-641) binds to half Dyad Symmetry element
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6PW2
Sample EBNA1 DNA binding domain binds to half Dyad Symmetry region
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 168682 Reported Resolution (Å) 3.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (6PW2, 6PW2, 6PW2, 6PW2, 6PW2, 6PW2) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value 135 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 1.03
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 10000 Maximum Defocus (nm) 30000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification 105000 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 3.1.3 CTF CORRECTION cryoSPARC 3.3.1 CTF CORRECTION RELION 3.1.3 MODEL FITTING UCSF Chimera 8.6.9 MODEL FITTING Coot 0.9.6 CLASSIFICATION RELION 3.1.3 RECONSTRUCTION RELION 3.1.3 MODEL REFINEMENT PHENIX 1.20 MODEL REFINEMENT Coot 0.9.6
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1806607