Experiment: 7TUR

X-RAY DIFFRACTION - NEUTRON DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5VJZ

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	7.5	277	40 mM NaOAc (pH 5.4), 2 mM PLP, 9% polyethylene glycol (PEG) 6000, and 10% glycerol. The crystal soaked with 50 mM Tris-HCl (pH 7.5), 5% PEG 6000, 5% glycerol, and 300 mM L-cysteinesulfinate in D2O for 24 h

Crystal Properties
Matthews coefficient	Solvent content
2.45	49.73

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	PIXEL	DECTRIS PILATUS 12M	MIRRORS	2018-11-15	M	SINGLE WAVELENGTH
2	1	neutron	293	IMAGE PLATE	MAATEL IMAGINE	COLLIMATORS	2018-10-04	L	LAUE

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.7	47.3	95.3	0.039						18.3	3		96556
2	2.2	55.21	75	0.161						7.5	5.4		33902

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	R Merge I (Observed)	R-Sym I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.7	1.76		0.37						3.3	2.2
2	2.2	2.32		0.308						4.4	4.3

Statistics
Diffraction ID	Structure Solution Method	Resolution (High)	Resolution (Low)	Cut-off Sigma (I)	Cut-off Sigma (F)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	1.7	39.71		2.5	101278	85754	4298	86.4			0.203	0.1909	0.233	0.2166		29.37
NEUTRON DIFFRACTION	MOLECULAR REPLACEMENT	2.22	39.71		2.5	46015	31861	1532	67.4			0.237		0.265			29.37

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
x_torsion_deg	25.9
x_torsion_deg	25.9
x_angle_deg	1
x_angle_deg	1
x_torsion_impr_deg	0.77
x_torsion_impr_deg	0.77
x_bond_d	0.01
x_bond_d	0.01

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6560
Nucleic Acid Atoms
Solvent Atoms	376
Heterogen Atoms	41

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7TUR | pdb_00007tur