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Cryo-EM structure of RIG-I bound to the internal sites of p3SLR30 (+ATP)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5E3H
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.552 r_dihedral_angle_3_deg 13.917 r_long_range_B_refined 12.4 r_long_range_B_other 12.4 r_dihedral_angle_4_deg 6.875 r_mcangle_it 4.894 r_mcangle_other 4.893 r_scangle_other 3.264 r_dihedral_angle_1_deg 3.094 r_mcbond_it 2.616
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.552 r_dihedral_angle_3_deg 13.917 r_long_range_B_refined 12.4 r_long_range_B_other 12.4 r_dihedral_angle_4_deg 6.875 r_mcangle_it 4.894 r_mcangle_other 4.893 r_scangle_other 3.264 r_dihedral_angle_1_deg 3.094 r_mcbond_it 2.616 r_mcbond_other 2.616 r_scbond_it 1.699 r_scbond_other 1.699 r_angle_other_deg 1.453 r_angle_refined_deg 1.008 r_chiral_restr 0.121 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Complex of RIG-I with p3SLR30
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 366751 Reported Resolution (Å) 3.2 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (5E3H) Refinement Space REAL Refinement Protocol Refinement Target Overall B Value 82 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 55
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 2700 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE