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BrxR from Acinetobacter BREX type I phage restriction system
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.3 300 10%PEG3000 / 0.1 M Hepes, pH 7.3 / 2% Benz-HCL
Crystal Properties Matthews coefficient Solvent content 2.23 44.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.414 α = 90 b = 48.672 β = 102.251 c = 96.005 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2020-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.97918 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 63.92 99.5 0.078 0.108 0.074 0.985 6.9 3 40089
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 97.7 0.317 0.438 0.3 0.863 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2 63.92 40077 2075 99.447 0.193 0.1905 0.1955 0.2384 0.2423 30.848
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.993 0.227 -0.75 -1.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.28 r_dihedral_angle_4_deg 17.306 r_dihedral_angle_3_deg 14.73 r_lrange_it 6.657 r_lrange_other 6.656 r_dihedral_angle_1_deg 6.595 r_scangle_it 5.117 r_scangle_other 5.116 r_mcangle_it 3.848 r_mcangle_other 3.848
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.28 r_dihedral_angle_4_deg 17.306 r_dihedral_angle_3_deg 14.73 r_lrange_it 6.657 r_lrange_other 6.656 r_dihedral_angle_1_deg 6.595 r_scangle_it 5.117 r_scangle_other 5.116 r_mcangle_it 3.848 r_mcangle_other 3.848 r_scbond_it 3.393 r_scbond_other 3.392 r_mcbond_it 2.726 r_mcbond_other 2.725 r_angle_refined_deg 1.571 r_angle_other_deg 1.269 r_symmetry_xyhbond_nbd_refined 0.378 r_nbd_other 0.212 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.189 r_symmetry_nbd_other 0.177 r_nbtor_refined 0.16 r_symmetry_nbd_refined 0.147 r_symmetry_xyhbond_nbd_other 0.121 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.075 r_xyhbond_nbd_other 0.032 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4372 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling pointless data scaling CRANK2 phasing