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G93A mutant of human SOD1 in P21 space group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WKO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 292 100mM NaOAc pH 4.7, 150mM NaCl, 2.7M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.05 40.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.74 α = 90 b = 68.21 β = 105.63 c = 51.08 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2021-01-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.980000 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 49.24 99.6 0.065 0.994 8.7 3.2 50157
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 99.2 0.542 0.563 1.8 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2WKO 1.4 49.24 50157 2598 99.549 0.2 0.1987 0.1988 0.229 0.2286 18.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.031 0.07 -0.85 0.674
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.396 r_dihedral_angle_3_deg 12.835 r_dihedral_angle_4_deg 8.369 r_dihedral_angle_1_deg 7.288 r_lrange_it 4.645 r_lrange_other 4.508 r_scangle_other 3.239 r_scangle_it 3.236 r_scbond_it 2.11 r_scbond_other 2.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.396 r_dihedral_angle_3_deg 12.835 r_dihedral_angle_4_deg 8.369 r_dihedral_angle_1_deg 7.288 r_lrange_it 4.645 r_lrange_other 4.508 r_scangle_other 3.239 r_scangle_it 3.236 r_scbond_it 2.11 r_scbond_other 2.096 r_mcangle_it 2.019 r_mcangle_other 2.019 r_angle_refined_deg 1.713 r_angle_other_deg 1.436 r_mcbond_it 1.301 r_mcbond_other 1.29 r_symmetry_nbd_refined 0.231 r_nbd_other 0.212 r_nbd_refined 0.184 r_symmetry_xyhbond_nbd_refined 0.179 r_symmetry_nbd_other 0.176 r_xyhbond_nbd_refined 0.174 r_nbtor_refined 0.149 r_ncsr_local_group_1 0.096 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.067 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2198 Nucleic Acid Atoms Solvent Atoms 240 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling MOLREP phasing