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P. aeruginosa LpxA in complex with ligand L13
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UEG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 12% PEG 1,000, 0.2 M CaOAc, 0.1 M imidazole pH 7
Crystal Properties Matthews coefficient Solvent content 2.17 43.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.1 α = 90 b = 82.22 β = 90 c = 222.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2020-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9789 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 46.04 99.2 0.082 0.088 0.03 0.998 12.6 8.3 98941
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 97.9 0.803 0.866 0.318 0.766 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6ueg 2 46.04 93861 5004 99.06 0.1933 0.1919 0.199 0.2183 0.2221 RANDOM 42.993
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 0.56 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.943 r_dihedral_angle_4_deg 20.165 r_dihedral_angle_3_deg 16.716 r_dihedral_angle_1_deg 7.691 r_angle_refined_deg 1.787 r_angle_other_deg 1.29 r_chiral_restr 0.295 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.943 r_dihedral_angle_4_deg 20.165 r_dihedral_angle_3_deg 16.716 r_dihedral_angle_1_deg 7.691 r_angle_refined_deg 1.787 r_angle_other_deg 1.29 r_chiral_restr 0.295 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11784 Nucleic Acid Atoms Solvent Atoms 291 Heterogen Atoms 316
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing