7SXI
Solution Structure of Sds3 Capped Tudor Domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.35 mM [U-100% 15N] Sds3 CTD | 90% H2O/10% D2O | 0.07 M | 6.0 | 1 atm | 298 | Agilent Direct Drive 600 |
2 | 3D 1H-13C NOESY aliphatic | 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD | 100% D2O | 0.07 M | 6.0 | 1 atm | 298 | Agilent Direct Drive 600 |
3 | 2D 1H-1H NOESY | 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD | 100% D2O | 0.07 M | 6.0 | 1 atm | 298 | Agilent Direct Drive 600 |
4 | 3D CBCA(CO)NH | 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD | 100% D2O | 0.07 M | 6.0 | 1 atm | 298 | Agilent Direct Drive 600 |
5 | 3D HNCACB | 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD | 100% D2O | 0.07 M | 6.0 | 1 atm | 298 | Agilent Direct Drive 600 |
8 | 3D HCCH-COSY | 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD | 100% D2O | 0.07 M | 6.0 | 1 atm | 298 | Agilent Direct Drive 600 |
7 | 3D HCCH-TOCSY | 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD | 100% D2O | 0.07 M | 6.0 | 1 atm | 298 | Agilent Direct Drive 600 |
6 | 3D C(CO)NH | 0.35 mM [U-100% 13C; U-100% 15N] Sds3 CTD | 100% D2O | 0.07 M | 6.0 | 1 atm | 298 | Agilent Direct Drive 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Agilent | Direct Drive | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | Felix | Accelrys Software Inc. | |
2 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
3 | chemical shift assignment | NMRFAM-SPARKY | Lee W, Tonelli M, Markley JL. Bioinformatics. 2015 Apr 15; 31(8):1325-7. | |
4 | peak picking | NMRFAM-SPARKY | Lee W, Tonelli M, Markley JL. Bioinformatics. 2015 Apr 15; 31(8):1325-7. | |
5 | structure calculation | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |