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Human Endogenous Retrovirus (HERV-K) reverse transcriptase ternary complex with dsDNA template Primer and dNTP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 10% PEG400, 50 mM MES pH 6.0, 2 mM MgCl2 and 100 mM KCl)
Crystal Properties Matthews coefficient Solvent content 3.47 64.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 177.697 α = 90 b = 177.697 β = 90 c = 117.414 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2020-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 1.49993 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.62 88.9 91.8 0.08 0.08 0.03 1 17.6 10.7 114382
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.62 2.71 49.4 1.08 0.35 0.78 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.62 88.848 114381 5628 91.771 0.17 0.1679 0.172 0.2184 0.2115 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.451 3.451 -6.902
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.277 r_dihedral_angle_other_3_deg 28.154 r_dihedral_angle_4_deg 21.552 r_dihedral_angle_3_deg 19.146 r_lrange_other 14.395 r_lrange_it 14.394 r_scangle_it 10.004 r_scangle_other 10.004 r_mcangle_it 9.649 r_mcangle_other 9.649
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.277 r_dihedral_angle_other_3_deg 28.154 r_dihedral_angle_4_deg 21.552 r_dihedral_angle_3_deg 19.146 r_lrange_other 14.395 r_lrange_it 14.394 r_scangle_it 10.004 r_scangle_other 10.004 r_mcangle_it 9.649 r_mcangle_other 9.649 r_dihedral_angle_1_deg 8.405 r_scbond_it 7.297 r_scbond_other 7.297 r_mcbond_it 6.92 r_mcbond_other 6.919 r_paralell_plane_angle_deg 6.049 r_angle_other_deg 2.192 r_angle_refined_deg 1.626 r_nbd_other 0.358 r_symmetry_nbd_refined 0.267 r_symmetry_nbd_other 0.239 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.204 r_nbtor_refined 0.184 r_symmetry_xyhbond_nbd_other 0.136 r_chiral_restr 0.135 r_symmetry_xyhbond_nbd_refined 0.127 r_metal_ion_refined 0.106 r_symmetry_nbtor_other 0.077 r_xyhbond_nbd_other 0.048 r_bond_other_d 0.032 r_gen_planes_other 0.017 r_gen_planes_refined 0.013 r_bond_refined_d 0.007 r_ext_dist_refined_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15773 Nucleic Acid Atoms 1770 Solvent Atoms 284 Heterogen Atoms 343
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction STARANISO data scaling PHASER phasing