☰ Navigation Tabs
Get3 bound to ATP from G. intestinalis in the closed form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IBG PDB entry 3ibg
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1 M Tris, pH 7.5, 0.2 M ammonium sulfate, 15% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.99 58.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.646 α = 90 b = 79.646 β = 90 c = 130.07 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.23 50 97.4 0.035 22.56 8.9 23301
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.23 2.27 0.453
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3ibg 2.23 43.39 22102 1199 97.42 0.17929 0.17763 0.1867 0.20886 0.2105 RANDOM 37.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.02 -0.04 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.009 r_dihedral_angle_4_deg 18.893 r_dihedral_angle_3_deg 13.287 r_long_range_B_refined 6.889 r_long_range_B_other 6.803 r_dihedral_angle_1_deg 6.233 r_scangle_other 4.53 r_mcangle_it 3.905 r_mcangle_other 3.904 r_scbond_it 2.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.009 r_dihedral_angle_4_deg 18.893 r_dihedral_angle_3_deg 13.287 r_long_range_B_refined 6.889 r_long_range_B_other 6.803 r_dihedral_angle_1_deg 6.233 r_scangle_other 4.53 r_mcangle_it 3.905 r_mcangle_other 3.904 r_scbond_it 2.77 r_scbond_other 2.77 r_mcbond_it 2.369 r_mcbond_other 2.369 r_angle_refined_deg 1.313 r_angle_other_deg 1.224 r_chiral_restr 0.059 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2539 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement PHENIX refinement HKL-3000 data reduction PHASER phasing SCALEPACK data scaling