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T-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.4376 f_angle_d 0.4237 f_chiral_restr 0.0346 f_plane_restr 0.0029 f_bond_d 0.0017
Sample Complex of phycobilisome from Synechocystis PCC 6803 with OCP
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details Manual blotting
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 176804 Reported Resolution (Å) 2.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.1 PARTICLE SELECTION RELION 3.1 IMAGE ACQUISITION SerialEM MODEL REFINEMENT PHENIX 1.92 INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC RECONSTRUCTION cryoSPARC 3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION