7RSE

NMR-driven structure of the KRAS4B-G12D "alpha-beta" dimer on a lipid bilayer nanodisc


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C TROSY80 uM ILV 13C-methyl; Lys 15N-amide KRAS4B90% H2O/10% D2O100 mM7.41 atm288Bruker AVANCE III 800
22D 1H-15N HSQC80 uM ILV 13C-methyl; Lys 15N-amide KRAS4B90% H2O/10% D2O100 mM7.41 atm288Bruker AVANCE III 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
simulated annealingPDB entry 4DSO was refined and then used the build the model for GTPase KRas.HADDOCK
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number1000
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisNMRViewJohnson, One Moon Scientific
4refinementHADDOCKBonvin
5structure calculationHADDOCKBonvin