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X25-2 domain of Sca5 from Ruminococcus bromii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 2M Ammonium sulfate, 0.1M NaAcetate pH=4.6
Crystal Properties Matthews coefficient Solvent content 4.61 73.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.82 α = 90 b = 100.82 β = 90 c = 87.93 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2018-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.979 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 50.46 99.98 1 17.1 9.2 60154
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.73 100 0.48 9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.67 50.46 57107 3049 99.98 0.1823 0.1816 0.1935 0.1963 0.2045 RANDOM 22.311
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.423 r_dihedral_angle_4_deg 14.682 r_dihedral_angle_3_deg 10.658 r_dihedral_angle_1_deg 7.02 r_angle_refined_deg 1.35 r_angle_other_deg 1.307 r_chiral_restr 0.054 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.423 r_dihedral_angle_4_deg 14.682 r_dihedral_angle_3_deg 10.658 r_dihedral_angle_1_deg 7.02 r_angle_refined_deg 1.35 r_angle_other_deg 1.307 r_chiral_restr 0.054 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1827 Nucleic Acid Atoms Solvent Atoms 304 Heterogen Atoms 74
Software Software Software Name Purpose xia2 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction AutoSol phasing