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VX-inhibited acetylcholinesterase in complex with 2-((hydroxyimino)methyl)-1-(5-(4-methyl-3-nitrobenzamido)pentyl)pyridinium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J06
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 27-30 % (w/v) PEG750MME
0.1 M HEPES pH 7.0-7.1
Crystal Properties Matthews coefficient Solvent content 4.2 70.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.154 α = 90 b = 112.094 β = 90 c = 226.852 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 1.0000 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.1 98.1 0.065 17.1 6 78034 39.8566132128
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 99.4 0.425 4.3 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1J06 2.40000421983 29.0277342368 1.33593122603 77850 1547 97.6971826567 0.169471079 0.16891694679 0.1694 0.196769530573 0.1969 51.6114750798
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 10.2877784985 f_angle_d 0.917041191182 f_chiral_restr 0.0552810252475 f_bond_d 0.00668065796147 f_plane_restr 0.0062416877652
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8326 Nucleic Acid Atoms Solvent Atoms 295 Heterogen Atoms 191
Software Software Software Name Purpose PHENIX refinement PHENIX refinement XDS data reduction SCALA data scaling REFMAC phasing