☰ Navigation Tabs
Room temperature In-situ SARS-CoV-2 MPRO with bound Z4439011584
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AEH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 298 11% (v/v) PEG 4K, 5% (v/v) DMSO, 0.1 M MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.07 40.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.199 α = 90 b = 54.485 β = 101.092 c = 115.725 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 6M-F 2020-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 1.0 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 56.846 97.9 0.166 0.183 0.073 0.987 10.8 5.9 10345
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.43 2.52 97.7 1.241 1.38 0.578 0.305 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7AEH 2.43 56.846 10339 543 97.87 0.152 0.1496 0.15 0.2003 0.2006 45.722
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.609 0.211 -0.549 0.998
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35 r_dihedral_angle_3_deg 15.818 r_dihedral_angle_4_deg 14.355 r_dihedral_angle_other_2_deg 8.494 r_dihedral_angle_1_deg 8.161 r_lrange_it 5.563 r_lrange_other 5.562 r_scangle_it 4.01 r_scangle_other 4.009 r_mcangle_other 2.913
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35 r_dihedral_angle_3_deg 15.818 r_dihedral_angle_4_deg 14.355 r_dihedral_angle_other_2_deg 8.494 r_dihedral_angle_1_deg 8.161 r_lrange_it 5.563 r_lrange_other 5.562 r_scangle_it 4.01 r_scangle_other 4.009 r_mcangle_other 2.913 r_mcangle_it 2.912 r_scbond_it 2.483 r_scbond_other 2.482 r_angle_refined_deg 1.903 r_mcbond_it 1.831 r_mcbond_other 1.826 r_angle_other_deg 1.359 r_nbd_other 0.27 r_symmetry_nbd_refined 0.227 r_nbd_refined 0.211 r_symmetry_nbd_other 0.193 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.162 r_symmetry_xyhbond_nbd_refined 0.117 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.076 r_dihedral_angle_other_3_deg 0.055 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2347 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling MOLREP phasing