7QQ1

X-ray structure of the adduct obtained upon reaction of [cis-Rh2(OCOCH3)2(OCOCF3)2] with HEWL


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 193L 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52980.10 M HEPES pH 7.5 2.00 M sodium formate
Crystal Properties
Matthews coefficientSolvent content
1.9938.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.58α = 90
b = 77.58β = 90
c = 37.93γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2021-05-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 11.2C1.00ELETTRA11.2C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4854.8696.30.0580.0170.99929.223.319342
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.481.5931.330.380.952.724.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE193L1.4854.861851892695.9960.1880.18620.224321.381
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.059-0.0590.118
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.431
r_dihedral_angle_4_deg19.661
r_dihedral_angle_3_deg15.638
r_dihedral_angle_1_deg7.075
r_lrange_it5.821
r_lrange_other5.82
r_scangle_it3.936
r_scangle_other3.934
r_mcangle_other2.6
r_mcangle_it2.587
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.431
r_dihedral_angle_4_deg19.661
r_dihedral_angle_3_deg15.638
r_dihedral_angle_1_deg7.075
r_lrange_it5.821
r_lrange_other5.82
r_scangle_it3.936
r_scangle_other3.934
r_mcangle_other2.6
r_mcangle_it2.587
r_scbond_it2.548
r_scbond_other2.528
r_angle_refined_deg1.918
r_mcbond_it1.852
r_mcbond_other1.799
r_angle_other_deg1.528
r_nbd_refined0.238
r_nbd_other0.219
r_symmetry_nbd_other0.2
r_xyhbond_nbd_refined0.176
r_nbtor_refined0.171
r_symmetry_xyhbond_nbd_refined0.165
r_metal_ion_refined0.154
r_chiral_restr0.098
r_symmetry_nbtor_other0.086
r_symmetry_nbd_refined0.085
r_symmetry_xyhbond_nbd_other0.058
r_bond_refined_d0.012
r_gen_planes_refined0.011
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms161
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
AutoProcessdata reduction
AutoProcessdata scaling
PHASERphasing