X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.928515% PEG 1000, 6 mM hexaamminecobalt (III) chloride, 0.1 M tris/HCl
Crystal Properties
Matthews coefficientSolvent content
3.0960.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 154.01α = 90
b = 154.01β = 90
c = 207.72γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2020-02-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1.00000SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.2148.991000.9915.572045535
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.213.291000.5120

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMIRFREE R-VALUE3.2148.9945533234199.9820.2290.22770.257273.288
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.1370.137-0.274
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.171
r_dihedral_angle_3_deg21.637
r_dihedral_angle_4_deg17.919
r_lrange_it8.077
r_lrange_other8.077
r_mcangle_it4.529
r_mcangle_other4.529
r_scangle_it3.522
r_scangle_other3.521
r_dihedral_angle_1_deg3.101
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.171
r_dihedral_angle_3_deg21.637
r_dihedral_angle_4_deg17.919
r_lrange_it8.077
r_lrange_other8.077
r_mcangle_it4.529
r_mcangle_other4.529
r_scangle_it3.522
r_scangle_other3.521
r_dihedral_angle_1_deg3.101
r_mcbond_it2.789
r_mcbond_other2.787
r_scbond_it2.248
r_scbond_other2.248
r_angle_other_deg1.466
r_angle_refined_deg1.02
r_symmetry_nbd_refined0.283
r_nbd_other0.241
r_symmetry_xyhbond_nbd_refined0.228
r_nbd_refined0.217
r_symmetry_nbd_other0.2
r_nbtor_refined0.168
r_xyhbond_nbd_refined0.079
r_symmetry_nbtor_other0.076
r_chiral_restr0.034
r_gen_planes_refined0.003
r_bond_refined_d0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13389
Nucleic Acid Atoms
Solvent Atoms264
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing