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Receptor-binding protein of Clostridium difficile phage CDHS-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 278 .1M HEPES pH 7, containing 0.05M ammonium acetate, 0.15M magnesium sulphate heptahydrate, 12% PEG smear medium, and 4% acetone
Crystal Properties Matthews coefficient Solvent content 4.27 71.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.99 α = 90 b = 178.206 β = 90 c = 227.621 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9793 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.462 113.81 95.8 0.259 0.074 0.994 7.7 6.8 117323 42.71
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.462 2.741 1.772 0.498 0.601
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.462 102.64 1.34 117312 5884 68.62 0.1964 0.1952 0.1975 0.2186 0.1966 48.863
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18731 Nucleic Acid Atoms Solvent Atoms 367 Heterogen Atoms 8
Software Software Software Name Purpose xia2 data scaling PHENIX refinement PDB_EXTRACT data extraction autoPROC data reduction Auto-Rickshaw phasing