7QLK

Cis structure intermediate of rsKiiro Illuminated at 200 K

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5OOZ
experimental model	PDB	5OQA

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	8.4	295	0.2 M lithium sulfate, 0.1 M Tris-Cl, 25 % PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
2.25	45.33

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 38.648	α = 90
b = 73.746	β = 90
c = 78.142	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2018-12-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.7293	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.458	53.691	87	0.135	0.999	10.7	13.1		34516

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.459	1.546			0.643	1.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5OOZ, 5OQA	1.458	53.691	34516	1672	86.735	0.173	0.1717	0.1973	18.663

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.009			0.012		-0.021

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.092
r_dihedral_angle_4_deg	22.773
r_dihedral_angle_3_deg	12.252
r_dihedral_angle_1_deg	7.458
r_lrange_it	5.967
r_lrange_other	5.76
r_scangle_it	4.148
r_scangle_other	4.139
r_scbond_it	2.711
r_scbond_other	2.682
r_mcangle_other	2.42
r_mcangle_it	2.418
r_angle_refined_deg	1.834
r_mcbond_it	1.693
r_mcbond_other	1.689
r_angle_other_deg	1.467
r_symmetry_xyhbond_nbd_refined	0.374
r_nbd_refined	0.262
r_xyhbond_nbd_refined	0.203
r_symmetry_nbd_other	0.202
r_nbd_other	0.184
r_nbtor_refined	0.174
r_symmetry_nbd_refined	0.128
r_chiral_restr	0.088
r_symmetry_nbtor_other	0.085
r_bond_refined_d	0.013
r_gen_planes_refined	0.011
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1747
Nucleic Acid Atoms
Solvent Atoms	197
Heterogen Atoms	11

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
STARANISO	data scaling
REFMAC	phasing