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A trimeric de novo coiled-coil assembly: CC-TypeN-LaLd
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 293 0.12 M (0.2M 1,6-Hexanediol; 0.2M 1-Butanol; 0.2M 1,2-Propanediol; 0.2M 2-Propanol; 0.2M 1,4-Butanediol; 0.2M 1,3-Propanediol),0.1 M (Imidazole; MES monohydrate (acid)), 37.5 % v/v (25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350) at pH 6.5
Crystal Properties Matthews coefficient Solvent content 1.83 32.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 22.22 α = 90 b = 22.22 β = 90 c = 128.32 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2020-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.919 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 21.39 100 0.071 1 21.5 9.9 13714
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.41 1.43 0.566 0.9 2.9 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.41 19.25 12996 660 99.87 0.1404 0.1388 0.1381 0.1765 0.1768 RANDOM 20.276
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -0.17 -0.35 1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.422 r_dihedral_angle_3_deg 13.921 r_dihedral_angle_1_deg 2.796 r_angle_other_deg 1.4 r_rigid_bond_restr 1.379 r_angle_refined_deg 1.297 r_chiral_restr 0.06 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.422 r_dihedral_angle_3_deg 13.921 r_dihedral_angle_1_deg 2.796 r_angle_other_deg 1.4 r_rigid_bond_restr 1.379 r_angle_refined_deg 1.297 r_chiral_restr 0.06 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 686 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms 17
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Arcimboldo phasing