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Racemic structure of PK-10 and PK-11
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 278 0.1M (Sodium malonate dibasic monohydrate, Imidazole, Boric acid), 25% w/v PEG1500 at pH 7.0
Crystal Properties Matthews coefficient Solvent content 1.77 30.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.928 α = 90 b = 19.379 β = 96.61 c = 55.644 γ = 90
Symmetry Space Group C 1 2/c 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2020-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9119 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 27.64 97.1 0.032 0.034 1 40.8 13 5150
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.44 1.47 94.8 0.097 0.1 1 19.1 13.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.44 15.7 4677 230 96.77 0.1314 0.1295 0.1403 0.1679 0.1696 RANDOM 9.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 -0.21 0.04 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.246 r_dihedral_angle_3_deg 9.514 r_rigid_bond_restr 4.807 r_dihedral_angle_1_deg 4.561 r_angle_refined_deg 3.229 r_angle_other_deg 1.463 r_chiral_restr 0.16 r_bond_refined_d 0.026 r_gen_planes_refined 0.009 r_bond_other_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.246 r_dihedral_angle_3_deg 9.514 r_rigid_bond_restr 4.807 r_dihedral_angle_1_deg 4.561 r_angle_refined_deg 3.229 r_angle_other_deg 1.463 r_chiral_restr 0.16 r_bond_refined_d 0.026 r_gen_planes_refined 0.009 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 145 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction SHELXT phasing