7QDE
NMR structure of Npl3 RRM12 bound to the AUCCAGUGGAA RNA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.9 mM [U-15N] Npl3 RRM12 | 90% H2O/10% D2O | 50 mM | 6.9 | 0 Pa | 313 | Bruker AVANCE 900 |
2 | 3D 1H-13C NOESY aliphatic | 0.9 mM [U-100% 13C; U-100% 15N] Npl3 RRM12 | 90% H2O/10% D2O | 50 mM | 6.9 | 0 Pa | 313 | Bruker AVANCE 900 |
3 | 3D 1H-13C NOESY aromatic | 0.9 mM [U-100% 13C; U-100% 15N] Npl3 RRM12 | 90% H2O/10% D2O | 50 mM | 6.9 | 0 Pa | 313 | Bruker AVANCE 900 |
4 | 2D NOESY | 0.9 mM [U-15N] Npl3 RRM12 | 90% H2O/10% D2O | 50 mM | 6.9 | 0 Pa | 313 | Bruker AVANCE III 700 |
5 | 2D NOESY F1F2f | 0.9 mM [U-100% 13C; U-100% 15N] Npl3 RRM12 | 90% H2O/10% D2O | 50 mM | 6.9 | 0 Pa | 313 | Bruker AVANCE III 600 |
6 | 2D NOESY F2f | 0.9 mM [U-100% 13C; U-100% 15N] Npl3 RRM12 | 90% H2O/10% D2O | 50 mM | 6.9 | 0 Pa | 313 | Bruker AVANCE III 600 |
7 | 3D HNCACB | 0.9 mM [U-100% 13C; U-100% 15N] Npl3 RRM12 | 90% H2O/10% D2O | 50 mM | 6.9 | 0 Pa | 313 | Bruker AVANCE III 700 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE III | 700 |
3 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | peak picking | CYANA | Guntert, Mumenthaler and Wuthrich |