7Q7Q | pdb_00007q7q

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5NJ4

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	LIPIDIC CUBIC PHASE		293	This LCP crystallization was performed in wells with 200uL precipitant and 20uL LCP+protein.

Crystal Properties
Matthews coefficient	Solvent content
3.65	66.28

Symmetry
Space Group	P 21 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	PIXEL	PSI JUNGFRAU 16M		2019-11-19	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	FREE ELECTRON LASER	SwissFEL ARAMIS BEAMLINE ESA	1.102	SwissFEL ARAMIS	ESA

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		injection

Data Reduction
Diffraction ID	Frames Indexed	Crystal Hits	Frames Indexed	Latices Merged
1	160275	260392	160275

Injection
Diffraction ID	Description	Flow Rate	Injector Diameter	Injection Power	Injector Nozzle	Filter Size	Carrier Solvent
1		0.047 (µl/min)	undefined (µm)

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.25	23.702	100	0.995	9.6	11.888		92545

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.25	2.27			0.54

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5NJ4	2.25	23.702	92515	4602	99.856	0.169	0.1678	0.1771	0.2028	0.2076	48.98

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.613			1.99		-2.602

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.062
r_dihedral_angle_4_deg	19.753
r_dihedral_angle_other_3_deg	16.304
r_dihedral_angle_3_deg	15.84
r_lrange_it	7.358
r_lrange_other	7.358
r_dihedral_angle_1_deg	6.581
r_scangle_it	5.594
r_scangle_other	5.594
r_mcangle_it	4.372

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.062
r_dihedral_angle_4_deg	19.753
r_dihedral_angle_other_3_deg	16.304
r_dihedral_angle_3_deg	15.84
r_lrange_it	7.358
r_lrange_other	7.358
r_dihedral_angle_1_deg	6.581
r_scangle_it	5.594
r_scangle_other	5.594
r_mcangle_it	4.372
r_mcangle_other	4.372
r_scbond_it	3.515
r_scbond_other	3.514
r_mcbond_it	2.873
r_mcbond_other	2.871
r_angle_refined_deg	2.13
r_angle_other_deg	1.203
r_nbd_refined	0.195
r_symmetry_nbd_other	0.176
r_nbtor_refined	0.168
r_nbd_other	0.157
r_xyhbond_nbd_refined	0.143
r_symmetry_nbd_refined	0.098
r_symmetry_xyhbond_nbd_other	0.086
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.074
r_symmetry_xyhbond_nbd_refined	0.062
r_bond_refined_d	0.008
r_gen_planes_refined	0.008
r_gen_planes_other	0.003
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9263
Nucleic Acid Atoms
Solvent Atoms	267
Heterogen Atoms	1022

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.