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Protein community member pyruvate dehydrogenase complex E2 core from C. thermophilum
ELECTRON MICROSCOPY
Refinement
RMS Deviations
Key
Refinement Restraint Deviation
f_dihedral_angle_d
27.2358
f_angle_d
0.9184
f_chiral_restr
0.0677
f_bond_d
0.0061
f_plane_restr
0.0047
Sample
Native 60-mer core of Pyruvate Dehydrogenase Complex
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
For plunging, blot force 0 and blotting time of 4 sec were applied.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
7825
Reported Resolution (Å)
3.84
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry Type
POINT
Point Symmetry
I
Map-Model Fitting and Refinement
Id
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
Overall B Value
Fitting Procedure
Details
Initial models were predicted using AlphaFold v2.0.1, fitted into reconstructions using COOT and finally refined in real space using COOT and phenix.r ...
Initial models were predicted using AlphaFold v2.0.1, fitted into reconstructions using COOT and finally refined in real space using COOT and phenix.real_space_refine