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Protein community member oxoglutarate dehydrogenase complex E2 core from C. thermophilum
ELECTRON MICROSCOPY
Refinement
RMS Deviations
Key
Refinement Restraint Deviation
f_dihedral_angle_d
26.4949
f_angle_d
1.4331
f_chiral_restr
0.0665
f_plane_restr
0.0109
f_bond_d
0.0091
Sample
Native 24-mer core of Oxoglutarate Dehydrogenase Complex
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
For plunging, blot force 0 and blotting time of 4 sec were applied.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
1819
Reported Resolution (Å)
4.38
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry Type
POINT
Point Symmetry
O
Map-Model Fitting and Refinement
Id
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
Overall B Value
Fitting Procedure
Details
Initial models were predicted using AlphaFold v.2.0.1, fitted into reconstructions using COOT and finally refined in real space using COOT and phenix. ...
Initial models were predicted using AlphaFold v.2.0.1, fitted into reconstructions using COOT and finally refined in real space using COOT and phenix.real_space_refine