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mycolic acid methyltransferase Hma (MmaA4) from Mycobac-terium tuberculosis in complex with ZT424
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FK7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 285 BisTris 50 mM,
PEG 3350 4% (w/v),
pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.64 53.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.772 α = 90 b = 56.772 β = 90 c = 207.019 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976251 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 49.17 99.6 0.052 0.057 0.999 17.27 6.72 27163
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.12 99.7 0.708 0.77 0.842 2.35 6.51
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2FK7 1.93 49.17 28529 1545 99.64 0.18737 0.18473 0.1937 0.23747 0.244 RANDOM 74.979
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.11 -0.23 0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.449 r_dihedral_angle_4_deg 20.318 r_dihedral_angle_3_deg 13.148 r_long_range_B_other 10.01 r_long_range_B_refined 10.008 r_scangle_other 9.22 r_scbond_it 7.8 r_scbond_other 7.799 r_mcangle_it 6.513 r_mcangle_other 6.513
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.449 r_dihedral_angle_4_deg 20.318 r_dihedral_angle_3_deg 13.148 r_long_range_B_other 10.01 r_long_range_B_refined 10.008 r_scangle_other 9.22 r_scbond_it 7.8 r_scbond_other 7.799 r_mcangle_it 6.513 r_mcangle_other 6.513 r_mcbond_other 6.282 r_mcbond_it 6.276 r_dihedral_angle_1_deg 6.108 r_angle_refined_deg 1.296 r_angle_other_deg 1.239 r_chiral_restr 0.06 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2270 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling XSCALE data scaling