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mycolic acid methyltransferase Hma (MmaA4) from Mycobac-terium tuberculosis in complex with ZT260
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FK7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 285 BisTris 50 mM,
PEG 3350 4% (w/v),
pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.65 53.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.111 α = 90 b = 57.111 β = 90 c = 205.897 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.939300 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 35.66 98.4 0.051 0.056 0.999 15.05 5.11 33875
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.96 96.7 1.093 1.264 0.591 0.98 3.72
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2FK7 1.9 35.69 29917 1619 99.29 0.18159 0.17924 0.22556 0.2456 RANDOM 58.022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.7 0.35 0.7 -2.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.683 r_dihedral_angle_4_deg 18.745 r_dihedral_angle_3_deg 13.036 r_long_range_B_other 8.755 r_long_range_B_refined 8.754 r_scangle_other 7.374 r_scbond_it 6.197 r_scbond_other 6.196 r_dihedral_angle_1_deg 6.132 r_mcangle_other 4.899
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.683 r_dihedral_angle_4_deg 18.745 r_dihedral_angle_3_deg 13.036 r_long_range_B_other 8.755 r_long_range_B_refined 8.754 r_scangle_other 7.374 r_scbond_it 6.197 r_scbond_other 6.196 r_dihedral_angle_1_deg 6.132 r_mcangle_other 4.899 r_mcangle_it 4.889 r_mcbond_it 4.508 r_mcbond_other 4.488 r_angle_refined_deg 1.233 r_angle_other_deg 1.225 r_chiral_restr 0.058 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2289 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling XSCALE data scaling