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mycolic acid methyltransferase Hma (MmaA4) from Mycobac-terium tuberculosis in complex with ZT218
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FK7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 285 BisTris 50 mM,
PEG 3350 4% (w/v),
pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.67 53.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.289 α = 90 b = 57.289 β = 90 c = 205.992 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.93930 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 40.21 99.8 0.082 0.09 0.996 11.49 5.98 34499
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.96 99.7 0.805 0.88 0.752 1.77 6.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2FK7 1.85 40.25 31602 1703 96.26 0.16884 0.16681 0.1805 0.2059 0.2159 RANDOM 51.767
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.54 0.27 0.54 -1.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.627 r_dihedral_angle_4_deg 20.782 r_dihedral_angle_3_deg 13.002 r_long_range_B_refined 8.521 r_long_range_B_other 8.519 r_scangle_other 8.472 r_scbond_other 6.85 r_scbond_it 6.848 r_dihedral_angle_1_deg 6.327 r_mcangle_other 6.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.627 r_dihedral_angle_4_deg 20.782 r_dihedral_angle_3_deg 13.002 r_long_range_B_refined 8.521 r_long_range_B_other 8.519 r_scangle_other 8.472 r_scbond_other 6.85 r_scbond_it 6.848 r_dihedral_angle_1_deg 6.327 r_mcangle_other 6.082 r_mcangle_it 6.081 r_mcbond_it 5.522 r_mcbond_other 5.514 r_angle_refined_deg 1.338 r_angle_other_deg 1.331 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2279 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling XSCALE data scaling