☰ Navigation Tabs
Structure of pathological TDP-43 filaments from ALS with FTLD
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.754 r_dihedral_angle_3_deg 17.122 r_long_range_B_refined 13.975 r_long_range_B_other 13.97 r_scangle_other 12.106 r_mcangle_other 8.558 r_mcangle_it 8.557 r_dihedral_angle_1_deg 8.241 r_scbond_it 7.955 r_scbond_other 7.948
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.754 r_dihedral_angle_3_deg 17.122 r_long_range_B_refined 13.975 r_long_range_B_other 13.97 r_scangle_other 12.106 r_mcangle_other 8.558 r_mcangle_it 8.557 r_dihedral_angle_1_deg 8.241 r_scbond_it 7.955 r_scbond_other 7.948 r_dihedral_angle_4_deg 6.736 r_mcbond_it 6.119 r_mcbond_other 6.103 r_angle_refined_deg 1.601 r_angle_other_deg 1.204 r_chiral_restr 0.055 r_bond_other_d 0.036 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Pathological TDP-43 filaments extracted from the frontal cortex of an individual that succumbed to ALS with FTLD.
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 308822 Reported Resolution (Å) 2.59 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 4.842 Angular Rotation 1.422
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 39.7
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION