7PXW

LPMO, expressed in E.coli, in complex with Cellotetraose


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5ACH 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE4.22772.3 M ammonium sulfate, 0.1 M sodium acetate pH 4.2. Crystals were soaked in 0.05 M cellotetraose in crystallization conditions with 18% glycerol for 30 min.
Crystal Properties
Matthews coefficientSolvent content
2.5752.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.77α = 90
b = 48.77β = 90
c = 109.32γ = 90
Symmetry
Space GroupP 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-12-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX IV BEAMLINE BioMAX0.98MAX IVBioMAX

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.444.5899.60.1170.99912.0713.6249868
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4499.73.4170.5513.57

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT5ACH1.444.5847376249299.560.11930.11710.1598RANDOM21.144
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.970.97-1.93
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.875
r_dihedral_angle_4_deg17.926
r_dihedral_angle_3_deg8.478
r_dihedral_angle_1_deg6.855
r_rigid_bond_restr3.97
r_angle_refined_deg1.837
r_angle_other_deg1.544
r_chiral_restr0.105
r_bond_refined_d0.015
r_gen_planes_refined0.012
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.875
r_dihedral_angle_4_deg17.926
r_dihedral_angle_3_deg8.478
r_dihedral_angle_1_deg6.855
r_rigid_bond_restr3.97
r_angle_refined_deg1.837
r_angle_other_deg1.544
r_chiral_restr0.105
r_bond_refined_d0.015
r_gen_planes_refined0.012
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1782
Nucleic Acid Atoms
Solvent Atoms302
Heterogen Atoms75

Software

Software
Software NamePurpose
autoPROCdata reduction
autoPROCdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction