7PUS

ERK5 in complex with Pyrrole Carboxamide scaffold

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5O7I

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	5 % (V/V) PEG 6000, 0.1 M MES (PH 6.0), 5 MM DTT

Crystal Properties
Matthews coefficient	Solvent content
2.91	57.76

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 91.671	α = 90
b = 91.671	β = 90
c = 113.81	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2015-05-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I24	0.9795	Diamond	I24

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.59	71.49	100	0.398	0.145	0.986	5.7	13.9		15740

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.59	71.39	100		0.114	0.123	0.045	0.983		11

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5O7I	2.59	71.49	15691	790	100	0.222	0.2192	0.2853	59.589

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.55			1.55		-3.1

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.603
r_dihedral_angle_4_deg	22.149
r_dihedral_angle_3_deg	16.831
r_lrange_it	15.093
r_scangle_it	10.901
r_mcangle_it	8.891
r_scbond_it	7.421
r_dihedral_angle_1_deg	6.205
r_mcbond_it	6.015
r_angle_refined_deg	1.672

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.603
r_dihedral_angle_4_deg	22.149
r_dihedral_angle_3_deg	16.831
r_lrange_it	15.093
r_scangle_it	10.901
r_mcangle_it	8.891
r_scbond_it	7.421
r_dihedral_angle_1_deg	6.205
r_mcbond_it	6.015
r_angle_refined_deg	1.672
r_nbtor_refined	0.313
r_symmetry_xyhbond_nbd_refined	0.268
r_symmetry_nbd_refined	0.218
r_nbd_refined	0.208
r_xyhbond_nbd_refined	0.119
r_chiral_restr	0.112
r_bond_refined_d	0.007
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2713
Nucleic Acid Atoms
Solvent Atoms	13
Heterogen Atoms	25

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
DIALS	data reduction
pointless	data scaling
PHASER	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.