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The glucocorticoid receptor in complex with velsecorat, a PGC1a coactivator fragment and sgk 23bp
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3G9O 3G9O, 4P6W experimental model PDB 4P6W 3G9O, 4P6W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 8.6 % PEG3350, 0.3 M 1,6-hexanediol, 0.1 M guanidine hydrochloride, 2 % 2,2,2-trifluoroethanol, 0.1 M BIS-TRIS propane pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.99 63.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.21 α = 90 b = 122.724 β = 90 c = 130.449 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2021-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.96550 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.502 89.385 93.4 0.082 0.09 0.036 0.999 12.6 6.3 23070
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.502 2.872 0.792 0.878 0.373 0.744 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3G9O, 4P6W 2.502 89.39 23070 1160 51.1 0.2048 0.2018 0.2035 0.2632 0.2648 RANDOM 88.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.6505 -6.9762 -1.6743
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 21.47 t_omega_torsion 2.49 t_angle_deg 0.93 t_bond_d 0.008 t_dihedral_angle_d t_gen_planes t_it t_chiral_improper_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5299 Nucleic Acid Atoms 939 Solvent Atoms 64 Heterogen Atoms 116
Software Software Software Name Purpose BUSTER refinement autoPROC data processing autoPROC data scaling MOLREP phasing XDS data reduction