☰ Navigation Tabs
Acinetobacter baumannii DNA gyrase B 23kDa ATPase subdomain complexed with EBL2704
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7PQI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 NULL
Crystal Properties Matthews coefficient Solvent content 2.22 44.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.111 α = 90 b = 48.436 β = 124.17 c = 83.317 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2021-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 43.61 99.7 0.09 0.098 0.038 0.998 13.1 6.5 52822
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 94.3 1.638 1.853 0.843 0.427 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7PQI 1.6 43.65 50096 2724 99.67 0.1638 0.1608 0.1723 0.2186 0.2283 RANDOM 28.926
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.16 1.39 -1.92 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.211 r_dihedral_angle_4_deg 13.178 r_dihedral_angle_3_deg 11.583 r_dihedral_angle_1_deg 6.121 r_rigid_bond_restr 1.47 r_angle_refined_deg 1.283 r_angle_other_deg 1.278 r_chiral_restr 0.059 r_bond_refined_d 0.006 r_gen_planes_refined 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.211 r_dihedral_angle_4_deg 13.178 r_dihedral_angle_3_deg 11.583 r_dihedral_angle_1_deg 6.121 r_rigid_bond_restr 1.47 r_angle_refined_deg 1.283 r_angle_other_deg 1.278 r_chiral_restr 0.059 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2864 Nucleic Acid Atoms Solvent Atoms 321 Heterogen Atoms 128
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction DIALS data reduction PHASER phasing