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Crystal structure of Campylobacter jejuni DsbA1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7PQ7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 0.12 M Ethylene glycols, 0.1M Tris/BICINE pH 8.5, 50 % v/v Precipitant Mix 1
Crystal Properties Matthews coefficient Solvent content 2.12 41.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.489 α = 90 b = 57.67 β = 90 c = 93.778 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.329 48.86 97.8 0.99 8.94 3.78 51341
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.33 1.41 0.65
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7PQ7 1.329 46.889 43262 1117 98.556 0.177 0.1759 0.1858 0.2192 0.2274 14.025
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.905 0.426 0.479
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.966 r_dihedral_angle_3_deg 13.042 r_dihedral_angle_4_deg 13.018 r_dihedral_angle_1_deg 6.235 r_lrange_it 3.921 r_lrange_other 3.596 r_scangle_it 1.919 r_scangle_other 1.918 r_angle_refined_deg 1.754 r_angle_other_deg 1.574
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.966 r_dihedral_angle_3_deg 13.042 r_dihedral_angle_4_deg 13.018 r_dihedral_angle_1_deg 6.235 r_lrange_it 3.921 r_lrange_other 3.596 r_scangle_it 1.919 r_scangle_other 1.918 r_angle_refined_deg 1.754 r_angle_other_deg 1.574 r_mcangle_it 1.229 r_mcangle_other 1.229 r_scbond_it 1.229 r_scbond_other 1.229 r_mcbond_it 0.773 r_mcbond_other 0.769 r_nbd_other 0.302 r_symmetry_nbd_refined 0.267 r_nbd_refined 0.227 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.18 r_symmetry_nbd_other 0.174 r_symmetry_xyhbond_nbd_refined 0.139 r_chiral_restr 0.098 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1549 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing