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apo FabB from Pseudomonas aeruginosa with single point mutation C161A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4XOX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 25% PEG3350, 20% Ethylene glycol, 0.2M NaI, 0.1M Bis-Tris propane pH7.5
Crystal Properties Matthews coefficient Solvent content 2.09 41.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.228 α = 90 b = 102.304 β = 90 c = 188.774 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2021-08-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 0.976246 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 47.19 99.7 0.058 0.999 22.3 13.4 174480
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 97.3 0.494 0.928 4.6 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4xox 1.3 47.19 165601 8810 99.62 0.11522 0.11408 0.1189 0.13664 0.1406 RANDOM 16.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.46 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.227 r_dihedral_angle_4_deg 17.079 r_dihedral_angle_3_deg 11.234 r_dihedral_angle_1_deg 6.679 r_long_range_B_refined 2.97 r_long_range_B_other 2.831 r_scangle_other 2.768 r_rigid_bond_restr 2.675 r_scbond_it 2.26 r_scbond_other 2.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.227 r_dihedral_angle_4_deg 17.079 r_dihedral_angle_3_deg 11.234 r_dihedral_angle_1_deg 6.679 r_long_range_B_refined 2.97 r_long_range_B_other 2.831 r_scangle_other 2.768 r_rigid_bond_restr 2.675 r_scbond_it 2.26 r_scbond_other 2.26 r_angle_refined_deg 1.828 r_mcangle_it 1.786 r_mcangle_other 1.786 r_angle_other_deg 1.639 r_mcbond_it 1.443 r_mcbond_other 1.442 r_chiral_restr 0.11 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5990 Nucleic Acid Atoms Solvent Atoms 492 Heterogen Atoms 89
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing