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Crystal structure of ZAD-domain of Pita protein from D.melanogaster
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 0.1M HEPES pH 7.5, 20% PEG 10 000
Crystal Properties Matthews coefficient Solvent content 1.92 36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.265 α = 90 b = 90.489 β = 90 c = 105.77 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 105.77 99.4 0.051 0.056 0.022 0.999 14 6.2 38834
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 98.9 1.195 1.308 0.525 0.73 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 62.81 36863 1941 99.21 0.1913 0.1897 0.1965 0.2219 0.2268 RANDOM 45.148
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.63 -1.28 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.667 r_dihedral_angle_4_deg 17.335 r_dihedral_angle_3_deg 16.309 r_dihedral_angle_1_deg 7.161 r_angle_refined_deg 2.095 r_angle_other_deg 1.433 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.011 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.667 r_dihedral_angle_4_deg 17.335 r_dihedral_angle_3_deg 16.309 r_dihedral_angle_1_deg 7.161 r_angle_refined_deg 2.095 r_angle_other_deg 1.433 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2928 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction Aimless data scaling PDB_EXTRACT data extraction CRANK2 phasing