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Bovine Glycine N-Acyltransferase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.2 M sodium malonate, 20% w/v polyethylene glycol 3,350, pH 5.0
Crystal Properties Matthews coefficient Solvent content 2 38.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.112 α = 90 b = 63.587 β = 90 c = 135.503 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 PIXEL DECTRIS EIGER2 X 16M 2020-10-15 M SINGLE WAVELENGTH 2 1 x-ray 45 PIXEL DECTRIS PILATUS 12M 2021-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9762 Diamond I03 2 SYNCHROTRON DIAMOND BEAMLINE I23 2.755 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 37.37 97.22 0.043 0.047 0.018 1 16.2 6.8 146947
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.25 0.4 1.18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.25 37.37 139600 7348 97.21 0.1779 0.1768 0.1862 0.1997 0.2081 RANDOM 23.2609
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 0.88 -1.22
RMS Deviations Key Refinement Restraint Deviation TORSION ANGLES. PERIOD 2 (DEGREES) 34.109 TORSION ANGLES. PERIOD 4 (DEGREES) 20.582 TORSION ANGLES. PERIOD 3 (DEGREES) 13.853 TORSION ANGLES. PERIOD 1 (DEGREES) 6.521 r_angle_refined_deg 1.754 r_angle_other_deg 1.45 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation TORSION ANGLES. PERIOD 2 (DEGREES) 34.109 TORSION ANGLES. PERIOD 4 (DEGREES) 20.582 TORSION ANGLES. PERIOD 3 (DEGREES) 13.853 TORSION ANGLES. PERIOD 1 (DEGREES) 6.521 r_angle_refined_deg 1.754 r_angle_other_deg 1.45 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4588 Nucleic Acid Atoms Solvent Atoms 433 Heterogen Atoms 14
Software Software Software Name Purpose xia2 data reduction XSCALE data scaling SHELXD phasing CRANK2 phasing HKL2Map model building PHASER phasing REFMAC refinement PDB_EXTRACT data extraction