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Structure of dark-adapted AsLOV2 Q513L
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V0U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 0.1 M sodium acetate pH 4.6-5.0, 6-8% (w/v) PEG 4000, 30% (v/v) glycerol
Crystal Properties Matthews coefficient Solvent content 1.92 35.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.61 α = 90 b = 54.55 β = 90 c = 66.46 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2019-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.7999 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.9 42.17 99 1 13.8 7.2 95419
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.9 0.95 97.6 0.371 0.99 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2V0U 0.9 42.165 95415 4771 98.934 0.116 0.115 0.1146 0.1393 0.1388 10.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.337 -0.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.134 r_dihedral_angle_4_deg 16.693 r_dihedral_angle_3_deg 14.158 r_dihedral_angle_1_deg 7.119 r_lrange_it 2.41 r_rigid_bond_restr 2.278 r_lrange_other 2.243 r_angle_refined_deg 1.987 r_scangle_it 1.947 r_scangle_other 1.946
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.134 r_dihedral_angle_4_deg 16.693 r_dihedral_angle_3_deg 14.158 r_dihedral_angle_1_deg 7.119 r_lrange_it 2.41 r_rigid_bond_restr 2.278 r_lrange_other 2.243 r_angle_refined_deg 1.987 r_scangle_it 1.947 r_scangle_other 1.946 r_scbond_other 1.719 r_scbond_it 1.718 r_angle_other_deg 1.479 r_mcangle_it 1.071 r_mcangle_other 1.07 r_mcbond_it 0.863 r_mcbond_other 0.856 r_nbd_refined 0.34 r_symmetry_nbd_refined 0.31 r_nbd_other 0.25 r_symmetry_nbd_other 0.213 r_xyhbond_nbd_refined 0.208 r_symmetry_xyhbond_nbd_refined 0.196 r_nbtor_refined 0.189 r_chiral_restr 0.102 r_symmetry_nbtor_other 0.088 r_symmetry_xyhbond_nbd_other 0.024 r_xyhbond_nbd_other 0.015 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1185 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 119
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing