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Structure of light-adapted AsLOV2 wild type
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V0U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.8 298 0.1 M sodium acetate pH 4.6-5.0, 6-8% (w/v) PEG 4000, 30% (v/v) glycerol
Crystal Properties Matthews coefficient Solvent content 1.97 37.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.61 α = 90 b = 56.01 β = 90 c = 66.52 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2020-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.09 42.845 99.2 0.999 12 7 55866
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.09 1.16 98 0.45 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2v0u 1.09 42.845 55866 2100 99.217 0.124 0.1226 0.1298 0.1612 0.1682 16.033
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.553 2.004 -1.451
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.19 r_dihedral_angle_4_deg 17.137 r_dihedral_angle_3_deg 12.813 r_dihedral_angle_1_deg 7.121 r_lrange_it 3.214 r_rigid_bond_restr 3.023 r_lrange_other 3.002 r_scangle_it 2.687 r_scangle_other 2.687 r_scbond_other 2.535
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.19 r_dihedral_angle_4_deg 17.137 r_dihedral_angle_3_deg 12.813 r_dihedral_angle_1_deg 7.121 r_lrange_it 3.214 r_rigid_bond_restr 3.023 r_lrange_other 3.002 r_scangle_it 2.687 r_scangle_other 2.687 r_scbond_other 2.535 r_scbond_it 2.531 r_mcangle_it 1.838 r_mcangle_other 1.837 r_angle_refined_deg 1.821 r_mcbond_it 1.599 r_mcbond_other 1.499 r_angle_other_deg 1.447 r_nbd_refined 0.29 r_symmetry_nbd_refined 0.241 r_symmetry_xyhbond_nbd_refined 0.231 r_nbtor_refined 0.199 r_nbd_other 0.199 r_symmetry_nbd_other 0.197 r_xyhbond_nbd_refined 0.182 r_xyhbond_nbd_other 0.108 r_chiral_restr 0.105 r_symmetry_xyhbond_nbd_other 0.103 r_symmetry_nbtor_other 0.083 r_symmetry_metal_ion_refined 0.073 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1186 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 89
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing