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Structure of dark-adapted AsLOV2 wild type
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V0U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 295 0.1 M sodium acetate pH 4.6-5.0, 6-8% (w/v) PEG 4000, 30% (v/v) glycerol
Crystal Properties Matthews coefficient Solvent content 1.98 37.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.5 α = 90 b = 56.42 β = 90 c = 66.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2020-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 43.07 93.1 0.999 13.5 7.5 67933
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.06 0.51
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2v0u 1.001 43.065 67871 3394 93.109 0.116 0.1141 0.1168 0.1472 0.1494 12.143
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.175 0.777 -0.602
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.535 r_dihedral_angle_4_deg 17.684 r_dihedral_angle_3_deg 12.295 r_dihedral_angle_1_deg 6.781 r_lrange_it 2.95 r_lrange_other 2.598 r_rigid_bond_restr 2.492 r_scangle_it 2.4 r_scangle_other 2.399 r_scbond_other 2.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.535 r_dihedral_angle_4_deg 17.684 r_dihedral_angle_3_deg 12.295 r_dihedral_angle_1_deg 6.781 r_lrange_it 2.95 r_lrange_other 2.598 r_rigid_bond_restr 2.492 r_scangle_it 2.4 r_scangle_other 2.399 r_scbond_other 2.25 r_scbond_it 2.248 r_angle_refined_deg 1.8 r_angle_other_deg 1.471 r_mcangle_it 1.128 r_mcangle_other 1.127 r_mcbond_it 0.935 r_mcbond_other 0.863 r_symmetry_nbd_refined 0.25 r_nbd_refined 0.209 r_symmetry_xyhbond_nbd_refined 0.197 r_symmetry_nbd_other 0.186 r_nbtor_refined 0.178 r_nbd_other 0.172 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.111 r_symmetry_nbtor_other 0.088 r_symmetry_xyhbond_nbd_other 0.032 r_metal_ion_refined 0.027 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1186 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 117
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing