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cryo-EM structure of DEPTOR bound to human mTOR complex 2, overall refinement
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6ZWM
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.014 f_angle_d 0.397 f_chiral_restr 0.037 f_plane_restr 0.003 f_bond_d 0.002
Sample mTORC2 in complex with its regulator DEPTOR
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 467078 Reported Resolution (Å) 3.41 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (6ZWM) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version CTF CORRECTION RELION 3.1 INITIAL EULER ASSIGNMENT cryoSPARC 3.2.0 FINAL EULER ASSIGNMENT cryoSPARC 3.2.0 CLASSIFICATION cryoSPARC 3.2.0 RECONSTRUCTION cryoSPARC 3.2.0 MODEL REFINEMENT PHENIX 1.19-4092
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION