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Streptococcus pneumoniae choline importer LicB in lipid nanodiscs
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 8.893 f_angle_d 0.559 f_chiral_restr 0.04 f_plane_restr 0.004 f_bond_d 0.003
Sample Choline importer in nanodiscs bound to nanobody
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 78649 Reported Resolution (Å) 3.75 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS GLACIOS Minimum Defocus (nm) Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC v3.2.0 CTF CORRECTION cryoSPARC v3.2.0 INITIAL EULER ASSIGNMENT cryoSPARC v3.2.0 FINAL EULER ASSIGNMENT cryoSPARC v3.2.0 CLASSIFICATION cryoSPARC v3.2.0 RECONSTRUCTION cryoSPARC v3.2.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION