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Non-canonical Staphylococcus aureus pathogenicity island repression.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 291 0.4M Ammonium phosphate, 25% PEG200
Crystal Properties Matthews coefficient Solvent content 2 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.211 α = 90 b = 100.211 β = 90 c = 298.688 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2017-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97936 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 86.76 99.7 0.846 14.2 5.9 20492
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.08 0.049 0.951 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.901 83.478 20482 1063 99.432 0.301 0.2985 0.3024 0.3428 0.3449 RANDOM 94.994
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.692 1.346 2.692 -8.732
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.665 r_lrange_it 16.051 r_lrange_other 16.051 r_dihedral_angle_3_deg 14.708 r_mcangle_it 12.003 r_mcangle_other 12 r_scangle_other 11.06 r_scangle_it 11.059 r_dihedral_angle_4_deg 10.081 r_mcbond_it 7.758
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.665 r_lrange_it 16.051 r_lrange_other 16.051 r_dihedral_angle_3_deg 14.708 r_mcangle_it 12.003 r_mcangle_other 12 r_scangle_other 11.06 r_scangle_it 11.059 r_dihedral_angle_4_deg 10.081 r_mcbond_it 7.758 r_mcbond_other 7.758 r_scbond_other 6.853 r_scbond_it 6.852 r_dihedral_angle_1_deg 6.061 r_angle_refined_deg 1.321 r_angle_other_deg 1.199 r_symmetry_xyhbond_nbd_refined 0.246 r_nbd_refined 0.206 r_nbd_other 0.183 r_symmetry_nbd_other 0.178 r_nbtor_refined 0.17 r_symmetry_nbd_refined 0.148 r_xyhbond_nbd_refined 0.123 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.046 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4204 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DIALS data scaling iMOSFLM data reduction Coot model building CRANK2 phasing