7OZB

FGFR1 kinase domain (residues 458-765) with mutations C488A, C584S in complex with 38.


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5A4C 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.72910.185M ammonium sulfate, 20% v/v ethylene glycol, 17% w/v PEG 8000, 0.1M PCPT
Crystal Properties
Matthews coefficientSolvent content
2.6553.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 206.26α = 90
b = 57.56β = 107.22
c = 65.79γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.9159DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7198.5197.40.0420.0490.0260.99814.13.677609
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.711.7596.80.9690.7370.7071.33.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5A4C1.7198.50777609382397.1590.2110.20880.244239.414
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.737-1.5783.631-0.768
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.554
r_dihedral_angle_3_deg13.152
r_dihedral_angle_4_deg12.979
r_lrange_it7.059
r_lrange_other7.058
r_dihedral_angle_1_deg6.237
r_scangle_it4.812
r_scangle_other4.812
r_mcangle_it3.757
r_mcangle_other3.756
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.554
r_dihedral_angle_3_deg13.152
r_dihedral_angle_4_deg12.979
r_lrange_it7.059
r_lrange_other7.058
r_dihedral_angle_1_deg6.237
r_scangle_it4.812
r_scangle_other4.812
r_mcangle_it3.757
r_mcangle_other3.756
r_scbond_it3.1
r_scbond_other3.094
r_mcbond_other2.624
r_mcbond_it2.623
r_angle_refined_deg1.383
r_angle_other_deg1.296
r_symmetry_nbd_refined0.211
r_nbd_refined0.207
r_nbd_other0.183
r_symmetry_nbd_other0.176
r_nbtor_refined0.162
r_xyhbond_nbd_refined0.152
r_symmetry_xyhbond_nbd_refined0.098
r_symmetry_nbtor_other0.074
r_chiral_restr0.064
r_bond_refined_d0.006
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4516
Nucleic Acid Atoms
Solvent Atoms184
Heterogen Atoms113

Software

Software
Software NamePurpose
xia2data reduction
Aimlessdata scaling
PHASERphasing
REFMACrefinement