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Carbonic anhydrase II mutant (I91C) dually binding an IrCp* complex to generate an artificial transfer hydrogenase (ATHase)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6QFU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.1 M TRIS 8.5 pH, 0.2 M MgCl2, 25% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.94 36.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.278 α = 90 b = 71.807 β = 90 c = 73.694 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2019-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0007 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.04 36.874 98.1 0.048 0.997 5.9 1.9 105855
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.04 1.06 0.198 0.807 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6QFU 1.04 36.874 105855 5294 97.88 0.184 0.1831 0.1856 0.2003 0.2019 13.586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 0.24 0.349
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_3_deg 47.027 r_dihedral_angle_2_deg 33.127 r_dihedral_angle_3_deg 12.651 r_dihedral_angle_4_deg 11.556 r_dihedral_angle_1_deg 7.204 r_lrange_it 4.625 r_lrange_other 4.38 r_scangle_it 3.423 r_scangle_other 3.422 r_angle_refined_deg 3.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_3_deg 47.027 r_dihedral_angle_2_deg 33.127 r_dihedral_angle_3_deg 12.651 r_dihedral_angle_4_deg 11.556 r_dihedral_angle_1_deg 7.204 r_lrange_it 4.625 r_lrange_other 4.38 r_scangle_it 3.423 r_scangle_other 3.422 r_angle_refined_deg 3.093 r_scbond_it 2.236 r_scbond_other 2.235 r_mcangle_it 1.539 r_mcangle_other 1.539 r_angle_other_deg 1.511 r_mcbond_it 1.069 r_mcbond_other 1.063 r_nbd_other 0.236 r_nbd_refined 0.223 r_symmetry_xyhbond_nbd_refined 0.218 r_symmetry_nbd_refined 0.212 r_symmetry_xyhbond_nbd_other 0.206 r_symmetry_nbd_other 0.197 r_xyhbond_nbd_refined 0.19 r_nbtor_refined 0.182 r_chiral_restr 0.102 r_symmetry_nbtor_other 0.089 r_metal_ion_refined 0.048 r_bond_refined_d 0.016 r_gen_planes_refined 0.014 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2027 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing