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Wild type carbonic anhydrase II with bound IrCp* complex to generate an artificial transfer hydrogenase (ATHase)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6QFU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.9 293 2.6 M (NH4)2SO4, 50 mM Tris-H2SO4, pH 7.9
Crystal Properties Matthews coefficient Solvent content 2.09 41.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.263 α = 90 b = 41.542 β = 104.388 c = 71.972 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.408 40.94 98.1 0.064 0.997 6.1 2 46067
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.41 1.43 92.5 0.238 0.523 1.2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6QFU 1.408 40.937 46067 2303 97.85 0.158 0.1569 0.1564 0.1821 0.1797 22.688
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.099 0.535 -0.342 0.147
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.306 r_dihedral_angle_4_deg 22.934 r_dihedral_angle_3_deg 12.933 r_dihedral_angle_1_deg 7.334 r_lrange_it 5.863 r_lrange_other 5.818 r_scangle_it 4.909 r_scangle_other 4.899 r_scbond_it 3.259 r_scbond_other 3.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.306 r_dihedral_angle_4_deg 22.934 r_dihedral_angle_3_deg 12.933 r_dihedral_angle_1_deg 7.334 r_lrange_it 5.863 r_lrange_other 5.818 r_scangle_it 4.909 r_scangle_other 4.899 r_scbond_it 3.259 r_scbond_other 3.221 r_mcangle_other 2.67 r_mcangle_it 2.667 r_angle_refined_deg 2.205 r_mcbond_it 1.996 r_mcbond_other 1.865 r_angle_other_deg 1.442 r_symmetry_nbd_refined 0.318 r_nbd_other 0.206 r_nbd_refined 0.203 r_symmetry_xyhbond_nbd_refined 0.186 r_symmetry_nbd_other 0.18 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.086 r_symmetry_nbtor_other 0.082 r_metal_ion_refined 0.031 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2039 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing