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Tankyrase 2 in complex with an inhibitor (OUL219)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OWS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 100 mM Tris pH=8.5, 200mM Lithium Sulphate, 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.69 54.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.93 α = 90 b = 98.53 β = 90 c = 119.37 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2019-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.82 0.999 17.28 6.8 49857
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.864 0.759
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5OWS 1.8 44.554 49846 2493 99.838 0.192 0.191 0.1988 0.2126 0.2167 34.561
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.712 -1.635 0.923
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.939 r_dihedral_angle_4_deg 19.483 r_dihedral_angle_3_deg 13.14 r_dihedral_angle_1_deg 6.905 r_lrange_it 5.425 r_lrange_other 5.377 r_scangle_it 3.498 r_scangle_other 3.495 r_mcangle_it 2.865 r_mcangle_other 2.865
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.939 r_dihedral_angle_4_deg 19.483 r_dihedral_angle_3_deg 13.14 r_dihedral_angle_1_deg 6.905 r_lrange_it 5.425 r_lrange_other 5.377 r_scangle_it 3.498 r_scangle_other 3.495 r_mcangle_it 2.865 r_mcangle_other 2.865 r_scbond_it 2.182 r_scbond_other 2.18 r_mcbond_it 1.826 r_mcbond_other 1.826 r_angle_refined_deg 1.258 r_angle_other_deg 1.203 r_symmetry_nbd_refined 0.204 r_nbd_refined 0.183 r_nbd_other 0.172 r_symmetry_xyhbond_nbd_refined 0.171 r_symmetry_nbd_other 0.169 r_nbtor_refined 0.16 r_xyhbond_nbd_refined 0.141 r_symmetry_nbtor_other 0.07 r_chiral_restr 0.052 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3337 Nucleic Acid Atoms Solvent Atoms 288 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing