7OK6

Crystal structure of UNC119B in complex with LCK peptide

X-RAY DIFFRACTION

---

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6H6A

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		291	30 % w/v PEG 4,000, 0.1 M HEPES pH 7.5, 0.2 M CaCl2

Crystal Properties
Matthews coefficient	Solvent content
2.4	48.7

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 55.083	α = 90
b = 67.004	β = 90
c = 106.691	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2019-09-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.91589	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.949	56.742	99.7	0.998	12.7	6.4		29562

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.949	2			0.91

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6H6A	1.949	56.742	29499	1477	99.865	0.184	0.1815	0.2239	32.072

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.963			3.657		-1.693

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.408
r_dihedral_angle_4_deg	17.012
r_dihedral_angle_3_deg	15.888
r_lrange_it	7.242
r_lrange_other	7.227
r_dihedral_angle_1_deg	7.087
r_scangle_it	5.402
r_scangle_other	5.401
r_mcangle_it	4.067
r_mcangle_other	4.066
r_scbond_it	3.512
r_scbond_other	3.512
r_mcbond_it	2.734
r_mcbond_other	2.733
r_angle_refined_deg	1.594
r_angle_other_deg	1.29
r_nbd_refined	0.202
r_symmetry_nbd_other	0.202
r_nbd_other	0.199
r_symmetry_nbd_refined	0.178
r_nbtor_refined	0.173
r_xyhbond_nbd_refined	0.15
r_symmetry_xyhbond_nbd_refined	0.137
r_symmetry_nbtor_other	0.091
r_chiral_restr	0.083
r_metal_ion_refined	0.065
r_symmetry_xyhbond_nbd_other	0.058
r_symmetry_metal_ion_refined	0.042
r_bond_refined_d	0.01
r_gen_planes_refined	0.008
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2862
Nucleic Acid Atoms
Solvent Atoms	177
Heterogen Atoms	43

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing