7OFM
NMR structure of the Bak transmembrane helix in DPC micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 400 uM [U-13C; U-15N; U-2H] Bak-TMH, 20 mM sodium phosphate, 50 mM sodium chloride, 0.5 mM EDTA, 5 mM DTT, 300 mM DPC | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 310 | Bruker AVANCE III 800 |
2 | 3D HNCO | 400 uM [U-13C; U-15N; U-2H] Bak-TMH, 20 mM sodium phosphate, 50 mM sodium chloride, 0.5 mM EDTA, 5 mM DTT, 300 mM DPC | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 310 | Bruker AVANCE III 800 |
3 | 3D HNCA | 400 uM [U-13C; U-15N; U-2H] Bak-TMH, 20 mM sodium phosphate, 50 mM sodium chloride, 0.5 mM EDTA, 5 mM DTT, 300 mM DPC | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 310 | Bruker AVANCE III 800 |
4 | 3D 1H-15N NOESY | 400 uM [U-13C; U-15N; U-2H] Bak-TMH, 20 mM sodium phosphate, 50 mM sodium chloride, 0.5 mM EDTA, 5 mM DTT, 300 mM DPC | 95% H2O/5% D2O | 100 mM | 7.0 | 1 atm | 310 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | peak picking | NMRFAM-SPARKY | U Wisconsin-Madison | |
4 | chemical shift assignment | NMRFAM-SPARKY | U Wisconsin-Madison | |
5 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |